rushd

Contents

  • Tutorials
    • Overview of rushd
      • Visualizing YAML well metadata
        • Automatic plotting of well metadata
        • Modifying output color mapping
        • Plotting non-96 wells
    • Flow cytometry
      • Loading flow data
        • Metadata in YAML
        • Metadata in filenames
    • qPCR
    • Droplet digital PCR (ddPCR)
    • Plotting
      • Generating table-like x-axis tick labels
  • API
    • Submodules
    • rushd.check module
      • git_repo_root()
      • in_git_repo()
      • is_running_in_venv()
      • sanity_check()
      • sanity_check_git()
      • sanity_check_nb_clean()
      • sanity_check_requirements()
      • sanity_check_venv()
    • rushd.ddpcr module
      • DataPathError
      • YamlError
      • load_ddpcr()
      • load_ddpcr_metadata()
    • rushd.flow module
      • ColumnError
      • DataPathError
      • GroupsError
      • MOIinputError
      • MetadataWarning
      • RegexError
      • YamlError
      • load_csv()
      • load_csv_with_metadata()
      • load_groups_with_metadata()
      • load_well_metadata()
      • moi()
    • rushd.io module
      • Rationale
      • NoDatadirError
      • cache_dataframe()
      • git_version()
      • infile()
      • outfile()
    • rushd.plot module
      • adjust_subplot_margins_inches()
      • debug_axes()
      • generate_xticklabels()
      • plot_mapping()
      • plot_well_metadata()
    • rushd.qpcr module
      • ColumnError
      • DataPathError
      • GroupsError
      • InputError
      • RegexError
      • YamlError
      • load_plates_with_metadata()
      • load_single_csv_with_metadata()
    • rushd.well_mapper module
      • Rationale
      • Specification
      • well_mapping()
    • Module contents
      • infile()
      • outfile()
      • sanity_check()
rushd
  • rushd: robust, reproducible data management
  • View page source

rushd: robust, reproducible data management

Contents

  • Tutorials
    • Overview of rushd
    • Flow cytometry
    • qPCR
    • Droplet digital PCR (ddPCR)
    • Plotting
  • API
    • Submodules
    • rushd.check module
    • rushd.ddpcr module
    • rushd.flow module
    • rushd.io module
    • rushd.plot module
    • rushd.qpcr module
    • rushd.well_mapper module
    • Module contents

  • Search Page

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