rushd

Contents

  • Tutorials
    • Overview of rushd
      • Visualizing YAML well metadata
        • Automatic plotting of well metadata
        • Modifying output color mapping
        • Plotting non-96 wells
    • Flow cytometry
      • Loading flow data
        • Metadata in YAML
        • Metadata in filenames
    • qPCR
    • Droplet digital PCR (ddPCR)
    • Plotting
      • Generating table-like x-axis tick labels
  • API
    • Submodules
    • rushd.ddpcr module
      • DataPathError
      • YamlError
      • load_ddpcr()
      • load_ddpcr_metadata()
    • rushd.flow module
      • ColumnError
      • DataPathError
      • GroupsError
      • MOIinputError
      • MetadataWarning
      • RegexError
      • YamlError
      • load_csv()
      • load_csv_with_metadata()
      • load_groups_with_metadata()
      • load_well_metadata()
      • moi()
    • rushd.io module
      • Rationale
      • NoDatadirError
      • cache_dataframe()
      • git_version()
      • infile()
      • outfile()
    • rushd.plot module
      • adjust_subplot_margins_inches()
      • debug_axes()
      • generate_xticklabels()
      • plot_mapping()
      • plot_well_metadata()
    • rushd.qpcr module
      • ColumnError
      • DataPathError
      • GroupsError
      • InputError
      • RegexError
      • YamlError
      • load_plates_with_metadata()
      • load_single_csv_with_metadata()
    • rushd.well_mapper module
      • Rationale
      • Specification
      • well_mapping()
    • Module contents
      • infile()
      • outfile()
rushd
  • Index

Index

A | C | D | G | I | L | M | N | O | P | R | W | Y

A

  • adjust_subplot_margins_inches() (in module rushd.plot)

C

  • cache_dataframe() (in module rushd.io)
  • ColumnError, [1]

D

  • DataPathError, [1], [2]
  • debug_axes() (in module rushd.plot)

G

  • generate_xticklabels() (in module rushd.plot)
  • git_version() (in module rushd.io)
  • GroupsError, [1]

I

  • infile() (in module rushd)
    • (in module rushd.io)
  • InputError

L

  • load_csv() (in module rushd.flow)
  • load_csv_with_metadata() (in module rushd.flow)
  • load_ddpcr() (in module rushd.ddpcr)
  • load_ddpcr_metadata() (in module rushd.ddpcr)
  • load_groups_with_metadata() (in module rushd.flow)
  • load_plates_with_metadata() (in module rushd.qpcr)
  • load_single_csv_with_metadata() (in module rushd.qpcr)
  • load_well_metadata() (in module rushd.flow)

M

  • MetadataWarning
  • module
    • rushd
    • rushd.ddpcr
    • rushd.flow
    • rushd.io
    • rushd.plot
    • rushd.qpcr
    • rushd.well_mapper
  • moi() (in module rushd.flow)
  • MOIinputError

N

  • NoDatadirError

O

  • outfile() (in module rushd)
    • (in module rushd.io)

P

  • plot_mapping() (in module rushd.plot)
  • plot_well_metadata() (in module rushd.plot)

R

  • RegexError, [1]
  • rushd
    • module
  • rushd.ddpcr
    • module
  • rushd.flow
    • module
  • rushd.io
    • module
  • rushd.plot
    • module
  • rushd.qpcr
    • module
  • rushd.well_mapper
    • module

W

  • well_mapping() (in module rushd.well_mapper)

Y

  • YamlError, [1], [2]

© Copyright 2026, Christopher Johnstone, Kasey Love, Conrad Oakes.

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