Tutorial 1: Modeling gene expression with differential equations

• Lesson PDF: Lesson1_Introduction.pdf

• Scripts: L1_constitutive_script.m, ode-modeling-python.ipynb

On your own:

1. Given the following parameters, calculate the steady state mRNA and protein levels for the simple model of protein expression in the notes. alpha_m = 5, beta_m = 0.1, alpha_p = 2, beta_p = 0.5

2. Use the provided MATLAB script or Python Jupyter notebook to plot mRNA and protein levels over time.